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| NCBI | The National Center for Biotechnology Information at NIH, USA |
| EBI | The European Bioinformatics Institute in Cambridge, UK |
Human Genome
| ENSEMBL | EBI, Hinxton, UK |
| The Sanger Centre | The Sanger Centre, Hinxton, UK |
| BROAD Institute | BROAD Institute, MIT and Harvard, Cambridge, MA, USA |
Non-Human Genomes
| Mouse | MGI Mouse Genome Informatics |
| C. elegans | Wormbase |
| Drosophila | Flybase |
| Saccharomyces | SGD Saccharomyces Genome Database |
| PROTEINS primary DB | UniProt, SWISS-PROT and TrEMBL (ExPASy, CH) |
| GENES primary DB | Gene Entrez (NCBI, USA) |
| Blast_NCBI | Basic/Advanced BLAST (blastall) search at NCBI |
Primary structure
| InterPro | Integrated resource of protein domains and functional sites (EBI, UK) |
| Pfam | Protein domains and motifs (EMBL) |
| ExPASy Tools | ExPASy Proteomics tools |
Secondary structure
| PredictProtein | The PredictProtein server (Columbia, USA) |
Tertiary structure (3D)
| Swiss-Model | SWISS-MODEL. An Automated Comparative Protein Modelling Server (ExPASy, CH) |
| PDB - RCSB | Protein Data Bank (RCSB) |
| PDBsum | Summaries and structural analyses of PDB data files (UCL, UK) |
| SCOP | Structural Classification of Proteins (MRC-LMB, UK) |
| CATH | CATH Protein Structure Classification (UCL-BSM, UK) |
| KEGG | KEGG:Kyoto Encyclopedia of Genes and Genomes (ICR, JP) |
| REACTOME | Reactome is a database of biological pathways |
| PubMed | PubMed is the National Library of Medicine's search service |